Template from TemplateFlow: MNIInfant¶

Open interactive notebook in Binder

To plot different templtes from templateflow, you just need to change the template specification:

template='MNIInfant',

The example nodes are scaled as the template is smalled than regular MNI space.

In [1]:

# Import packages
import netplotbrain
import pandas as pd

#Path to node and edge example data on netplotbrain
nodepath = 'https://raw.githubusercontent.com/wiheto/netplotbrain/main/examples/example_nodes.tsv'
edgepath = 'https://raw.githubusercontent.com/wiheto/netplotbrain/main/examples/example_edges.tsv'

# Load example data 
nodes = pd.read_csv(nodepath, sep='\t', index_col=0)
edges = pd.read_csv(edgepath, sep='\t', index_col=0)

# Rescale example node data to fit template
nodes_inf = nodes.copy()
nodes_inf['x'] = nodes_inf['x'] / 1.25
nodes_inf['y'] = nodes_inf['y'] / 1.25
nodes_inf['z'] = nodes_inf['z'] / 1.25

# Plot figure
netplotbrain.plot(template='MNIInfant_cohort-2',
         template_style='surface',
         title='Infant template',
         view='LSR',
         nodes=nodes_inf,
         node_size='centrality_measure1',
         node_color='community',
         node_scale=80,
         edges=edges,
         template_voxelsize=5)

# Import packages import netplotbrain import pandas as pd #Path to node and edge example data on netplotbrain nodepath = 'https://raw.githubusercontent.com/wiheto/netplotbrain/main/examples/example_nodes.tsv' edgepath = 'https://raw.githubusercontent.com/wiheto/netplotbrain/main/examples/example_edges.tsv' # Load example data nodes = pd.read_csv(nodepath, sep='\t', index_col=0) edges = pd.read_csv(edgepath, sep='\t', index_col=0) # Rescale example node data to fit template nodes_inf = nodes.copy() nodes_inf['x'] = nodes_inf['x'] / 1.25 nodes_inf['y'] = nodes_inf['y'] / 1.25 nodes_inf['z'] = nodes_inf['z'] / 1.25 # Plot figure netplotbrain.plot(template='MNIInfant_cohort-2', template_style='surface', title='Infant template', view='LSR', nodes=nodes_inf, node_size='centrality_measure1', node_color='community', node_scale=80, edges=edges, template_voxelsize=5)

Out[1]:

(<Figure size 648x288 with 5 Axes>,
 [<Axes3D: title={'center': 'Left'}>,
  <Axes3D: title={'center': 'Superior'}>,
  <Axes3D: title={'center': 'Right'}>,
  <Axes: >,
  <Axes: >])