Different node styles¶

Open interactive notebook in Binder

There are currently three different node style options to choose from: circles, spheres, parcels. You just need to change the specification in the node_type argument.

In [1]:

# Import packages
import netplotbrain
import matplotlib.pyplot as plt

# Import packages import netplotbrain import matplotlib.pyplot as plt

In [2]:

fig  = plt.figure()

fig = plt.figure()

<Figure size 432x288 with 0 Axes>

In [3]:

# Circles
ax = fig.add_subplot(131, projection='3d')
netplotbrain.plot(nodes={'atlas': 'Schaefer2018',
                            'desc': '100Parcels7Networks',
                            'resolution': 1},
                  template='MNI152NLin6Asym',
                  template_style='glass',
                  template_glass_maxalpha=0.03,
                  view='S',
                  node_type='circles',
                  node_scale=40,
                  node_alpha=1,
                  arrowaxis=None,
                  subtitles='Circles',
                  fig=fig, ax=ax)

# Circles ax = fig.add_subplot(131, projection='3d') netplotbrain.plot(nodes={'atlas': 'Schaefer2018', 'desc': '100Parcels7Networks', 'resolution': 1}, template='MNI152NLin6Asym', template_style='glass', template_glass_maxalpha=0.03, view='S', node_type='circles', node_scale=40, node_alpha=1, arrowaxis=None, subtitles='Circles', fig=fig, ax=ax)

Out[3]:

(<Figure size 432x288 with 1 Axes>, [<Axes3D: title={'center': 'Circles'}>])

In [4]:

# Spheres
ax = fig.add_subplot(132, projection='3d')
netplotbrain.plot(nodes={'atlas': 'Schaefer2018',
                            'desc': '100Parcels7Networks',
                            'resolution': 1},
                  template='MNI152NLin6Asym',
                  template_style='glass',
                  template_glass_maxalpha=0.03,
                  view='S',
                  node_type='spheres',
                  node_alpha=1,
                  arrowaxis=None,
                  subtitles='Spheres',
                  fig=fig, ax=ax)

# Spheres ax = fig.add_subplot(132, projection='3d') netplotbrain.plot(nodes={'atlas': 'Schaefer2018', 'desc': '100Parcels7Networks', 'resolution': 1}, template='MNI152NLin6Asym', template_style='glass', template_glass_maxalpha=0.03, view='S', node_type='spheres', node_alpha=1, arrowaxis=None, subtitles='Spheres', fig=fig, ax=ax)

Out[4]:

(<Figure size 432x288 with 2 Axes>, [<Axes3D: title={'center': 'Spheres'}>])

In [5]:

# Parcels
ax = fig.add_subplot(133, projection='3d')
netplotbrain.plot(nodes={'atlas': 'Schaefer2018',
                           'desc': '100Parcels7Networks',
                           'resolution': 1},
                  template='MNI152NLin6Asym',
                  template_style=None,
                  view='S',
                  node_type='parcels',
                  node_alpha=1,
                  node_color='tab20c',
                  arrowaxis=None,
                  subtitles='Parcels',
                  fig=fig, ax=ax)

# Parcels ax = fig.add_subplot(133, projection='3d') netplotbrain.plot(nodes={'atlas': 'Schaefer2018', 'desc': '100Parcels7Networks', 'resolution': 1}, template='MNI152NLin6Asym', template_style=None, view='S', node_type='parcels', node_alpha=1, node_color='tab20c', arrowaxis=None, subtitles='Parcels', fig=fig, ax=ax)

Out[5]:

(<Figure size 432x288 with 3 Axes>, [<Axes3D: title={'center': 'Parcels'}>])