Template from TemplateFlow: WHS¶

Open interactive notebook in Binder

To plot different templtes from templateflow, you just need to change the template specification:

template='WHS',

The example nodes are scaled as the template is smalled than regular MNI space.

In [1]:

# Import packages
import netplotbrain
import pandas as pd

#Path to node and edge example data on netplotbrain
nodepath = 'https://raw.githubusercontent.com/wiheto/netplotbrain/main/examples/example_nodes.tsv'
edgepath = 'https://raw.githubusercontent.com/wiheto/netplotbrain/main/examples/example_edges.tsv'

# Load example data 
nodes = pd.read_csv(nodepath, sep='\t', index_col=0)
edges = pd.read_csv(edgepath, sep='\t', index_col=0)

# Rescale example node data to fit template
nodes_whs = nodes.copy()
nodes_whs['x'] = nodes_whs['x'] / 8
nodes_whs['y'] = nodes_whs['y'] / 8
nodes_whs['z'] = nodes_whs['z'] / 8

# Plot figure
netplotbrain.plot(template='WHS',
         template_style='surface',
         title='Multiple templates possible',
         view='LSR',
         nodes=nodes_whs,
         node_size='centrality_measure1',
         edges=edges,
         node_color='community',
         node_scale=80,
         template_voxelsize=0.2)

# Import packages import netplotbrain import pandas as pd #Path to node and edge example data on netplotbrain nodepath = 'https://raw.githubusercontent.com/wiheto/netplotbrain/main/examples/example_nodes.tsv' edgepath = 'https://raw.githubusercontent.com/wiheto/netplotbrain/main/examples/example_edges.tsv' # Load example data nodes = pd.read_csv(nodepath, sep='\t', index_col=0) edges = pd.read_csv(edgepath, sep='\t', index_col=0) # Rescale example node data to fit template nodes_whs = nodes.copy() nodes_whs['x'] = nodes_whs['x'] / 8 nodes_whs['y'] = nodes_whs['y'] / 8 nodes_whs['z'] = nodes_whs['z'] / 8 # Plot figure netplotbrain.plot(template='WHS', template_style='surface', title='Multiple templates possible', view='LSR', nodes=nodes_whs, node_size='centrality_measure1', edges=edges, node_color='community', node_scale=80, template_voxelsize=0.2)

Out[1]:

(<Figure size 648x288 with 5 Axes>,
 [<Axes3D: title={'center': 'Left'}>,
  <Axes3D: title={'center': 'Superior'}>,
  <Axes3D: title={'center': 'Right'}>,
  <Axes: >,
  <Axes: >])